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商品編號


L6030-HC-L



品牌


Enzymatics



公司


Enzymatics,inc



公司分類(lèi)


Ultrapure Ligases



Size

240,000 U

商品信息

T4 DNA Ligase (Rapid)


Product Description

T4 DNA Ligase?catalyzes the formation of a phosphodiester bond between the terminal 5′ phosphate and a 3′ hydroxyl groups of duplex DNA or RNA. The enzyme efficiently joins blunt and cohesive ends and repairs single stranded nicks in duplex DNA, RNA or DNA/RNA hybrids (1).

Source of Protein

A recombinant?
E. coli
?strain carrying the cloned T4 DNA Ligase gene.

Supplied In

10 mM Tris-HCl
50 mM KCl
1 mM DTT
0.1 mM EDTA
50% glycerol
pH 7.5 @ 25°C

Supplied With
B1010 (2X Rapid Ligation Buffer)
B6030 (10X T4 DNA Ligase Buffer)

2X Rapid Ligation Buffer (B1010):

132mM Tris-HCI
20 mM MgCl
2
2 mM DTT
2 mM ATP
15% PEG 6000
pH 7.6 @ 25°C

10X T4 DNA Ligase Buffer (B6030):

500mM Tris-HCI
100 mM MgCl
2
50 mM DTT
10 mM ATP
pH 7.6 @ 25°C

Unit Definition
1 unit is defined as the amount of DNA Ligase required to join 50% of 100 ng of DNA fragments with cohesive termini in 50 ?l 1X DNA Ligase Buffer following a 30 minute incubation at 23°C.



Quality Control Analysis

Unit Characterization Assay
Unit activity was measured using a 2-fold serial dilution method. Dilutions of enzyme were made in 1X DNA Ligase Reaction Buffer and added to 20 ?L reactions containing double stranded DNA fragments and 1X DNA Ligase Reaction Buffer. Reactions are incubated for 30 minutes at ~23°C, stopped, and analyzed on a 1% agarose gel stained with ethidium bromide.

Protein Concentration (OD
280
) Measurement
A 2.0 ?L sample of enzyme was analyzed at OD
280
?using a
Nanodrop
ND-1000 spectrophotometer standardized using a 2.0 mg/ml BSA sample (
Pierce
Cat #23209) and blanked with product storage solution. The observed average measurement of 3 replicate samples was converted to mg/mL using an extinction coefficient of 54,050 and molecular weight of 55,292 Daltons.

SDS-Page (Physical Purity Assessment)
2.0 ?L of concentrated enzyme solution was loaded on a denaturing 4-20% Tris-Glycine SDS-PAGE gel flanked by a broad-range MW
Marker
and 2.0 ?L of a 1:100 dilution of the same enzyme species. Following electrophoresis, the gel was stained and the samples compared to determine physical purity. The acceptance criteria for this test requires that the aggregate mass of contaminant bands in the concentrated sample do not exceed the mass of the protein of interest band in the dilute sample, confirming greater than 99% purity of the concentrated sample.



Contamination Tests

Single-Stranded Exonuclease Activity
A 50 ?L reaction containing 10,000 cpm of a r
ADI
olabeled single-stranded DNA substrate and 10 ?L of enzyme solution incubated for 4 hours at 37°C resulted in less than 1.0% release of TCA-soluble counts.

Double-Stranded Exonuclease Activity
A 50 ?l reaction containing 5,000 cpm of a r
ADI
olabeled double-stranded DNA substrate and 10 ?L of enzyme solution incubated for 4 hours at 37°C resulted in less than 1.0% release of TCA-soluble counts.

Double-Stranded Endonuclease Activity
A 50 ?L reaction containing 0.5 ?g of pENZuC DNA and 10 ?L of enzyme solution incubated for 4 hours at 37°C resulted in no visually discern
IBL
e conversion to nicked circular DNA as determined by agarose gel electrophoresis.

E.coli
?16S rDNA Contamination Test:
Replicate 5 ?L samples of enzyme solution were denatured and screened in a TaqMan qPCR assay for the presence of contaminating?
E.coli
?genomic DNA using oligonucleotide primers corresponding to the 16S rRNA locus. The acceptance criterion for the test is the threshold cycle count (C
t
) produced by the average of 3 replicate no template control samples. Based on the correlation between the no template control C
t
?values and standard curve data, the detection limit of this assay is <10 copies genome/sample.


View PDF Poster Instructions FAQ


Product Information



T4 DNA Ligase (Rapid)


Part Number
L6030-HC-L
Price
$513
Concentration
600,000 U/ml
Unit Size
240,000 U


SDS

Available on request








Product Specification*


Storage Temperature
-25 to -15°C


Test

Specification


Purity (SDS-PAGE)
>99%
Specific Activity
300,000 U/mg
SS Exonuclease
6,000 U <1.0% released
DS Exonuclease
6,000 U <1.0% released
DS Endonuclease
6,000 U = no conversion
E.coli
DNA Contamination
6,000 U <10 copies





* For a detailed summary of assay conditions and data, refer to the Quality Controls Analysis section.

Usage Instructions

Reaction Set-Up:




Amount

Description

Final Concentration



10 ?L

2X Rapid Ligation Buffer

1X



X ?L

Vector

1-10 ng/?L



X ?L

Insert

1-10 ng/?L



1 ?L

T4 DNA Ligase (600 U/ ?L)

30 U/?L



X ?L

Type I Water

N/A



20 ?L

Total Volume




?


Add all of above components to a clean reaction vessel, mix well by pipetting.

Incubate at 25°C for 10 minutes.

Immediately purify DNA using PCR clean-up column and elute in ~50 ?L.

– OR – Immediately dilute (at least 1:10, but enough such that 0.1-10 ng of ligation product will be transformed) in TE or water

Transform 0.1-10 ng of ligation product into chemically or electrocompetent cell line that is compat
IBL
e with vector


Notes

One
Enzymatics
T4 DNA Ligase cohesive end unit is equivalent to approximately 3 cohesive end units as measured with a Lam
BD
a-Hind III DNA fragment substrate in 1X T4 DNA Ligase reaction buffer.

One Weiss Unit is approximately equivalent to 22
Enzymatics
cohesive end units.

T4 DNA Ligase is ATP dependent. It is recommended that the reaction buffer be discarded after one year of storage at -20°C and replaced with fresh buffer to ensure maximum performance. Single-insert ligations are optimal when targeting an insert:vector ratio between 2 and 6. A ratio above 6:1 will promote the insertion of multiple fragments, while dropping below 2:1 will reduce ligation efficiency.

For problematic ligations or if the DNA concentration is unknown, it may be necessary to vary ratios and run multiple ligations.

The presence of PEG at a high concentration will significantly reduce the transformation efficiency of electrocompetent cells. In order to maximize the efficiency of transformation into electrocompetent cells, the following approaches are recommended:


Best:

Following ligation, purify the product using a DNA purification spin column and elute in 50 ?L of TE. The DNA is now ready for transformation. The final amount of DNA to be transformed should be in the range of 0.1-10 ng.


Better:

Dilute ligation product in ddH20 or TE to reduce the PEG concentration. The final amount of DNA to be transformed should be in the range of 0.1-10 ng.

Enzymatics
’ high-concentration T4 DNA Ligase in combination with the 2X Rapid Ligation buffer greatly stimulates the rate and efficiency blunt-end ligation, therefore long incubations (>10 minutes) are NOT recommended and can greatly reduce the transformation efficiency of ligation products. In order to maximize transformation efficiency of the correct insert/vector combination, the following protocol is recommended.

Enzymatics
10X T4 DNA Ligase Buffer does not contain PEG and is compat
IBL
e with standard ligation protocols which do not specify the use of a rapid/fast/quick format buffer.

References


Engler, M.J. and Richardson, C.C. (1982) P.D. Boyer (Eds.), The Enzymes, 5, pp. 3. San Diego: Academic Press.




Limitations of Use
This product was developed, manufactured, and sold for in vitro use only. The product is not suitable for admi
NIST
ration to humans or animals. SDS sheets relevant to this product are available upon request.